| check_it(string buff) | CleanFile< GENOME_TYPE > | [private] |
| checkE(string End) | CleanFile< GENOME_TYPE > | [private] |
| checkK(string KO) | CleanFile< GENOME_TYPE > | [private] |
| checkO(string Or) | CleanFile< GENOME_TYPE > | [private] |
| checkS(string Start) | CleanFile< GENOME_TYPE > | [private] |
| CleanFile(string &filename) | CleanFile< GENOME_TYPE > | |
| copy_it(string buff, FILE *LG) const | CleanFile< GENOME_TYPE > | [private] |
| copy_title(FILE *file, FILE *legal_file) const | CleanFile< GENOME_TYPE > | [private] |
| fileN | CleanFile< GENOME_TYPE > | [private] |
| get_or(string Orientation) | CleanFile< GENOME_TYPE > | [private] |
| getCleanRes(string fileRes) | CleanFile< GENOME_TYPE > | |
| intersection(const CleanFile< GENOME_TYPE > &clean, vector< SEQ< GENOME_TYPE > > &res1, vector< SEQ< GENOME_TYPE > > &res2, string fileRes) const | CleanFile< GENOME_TYPE > | |
| isdigit(char c) | CleanFile< GENOME_TYPE > | [private] |
| isspace(char c) | CleanFile< GENOME_TYPE > | [private] |
| itr typedef | CleanFile< GENOME_TYPE > | [private] |
| legalize_it(FILE *file) | CleanFile< GENOME_TYPE > | [private] |
| MakeLegal() | CleanFile< GENOME_TYPE > | |
| segments | CleanFile< GENOME_TYPE > | [private] |
| skipspaces(string ar) | CleanFile< GENOME_TYPE > | [private] |
| string2GENOMEType(string str) | CleanFile< GENOME_TYPE > | [private] |
| Tokenize(const string &str, vector< string > &tokens, const string &delimiters) | CleanFile< GENOME_TYPE > | [private] |
| ~CleanFile() | CleanFile< GENOME_TYPE > | |
