view
Class DataView

java.lang.Object
  view.DataView

public class DataView
extends java.lang.Object

Title: Bioinformatics Project

Description: Genomes Comparacent

Copyright: Copyright (c) 2005-2006

DataView is the Viewer of the system. loads the main window of the application, sets it with the initial values, updates buttom/view accordingly.

Version:

1.0

Author:

Shadi Ibrahem.

Field Summary

private org.eclipse.swt.widgets.Group	ActionGroup Group containing the combo boxes and the main tab buttons.
private org.eclipse.swt.widgets.Button	AddGenomeButton Add new genome button.
private org.eclipse.swt.widgets.Combo	comboGene1 First genome combo box.
private org.eclipse.swt.widgets.Combo	comboGene2 Second genome combo box.
private IDataHandler	controller_ The controller of magic.
(package private) org.eclipse.swt.widgets.Display	display The display of magic.
private org.eclipse.swt.widgets.Button	HistoryButton History button, opens a new tab.
private java.lang.String	inputDirectory Input directory path, default is Magic root/Data.
private org.eclipse.swt.widgets.Group	Instructions Instructions groups, meanwhile conatining a label.
private Magic	magic An object holding magic default settings/or settings set by the user.
private org.eclipse.swt.widgets.Group	mainGroup The main group, mean while holding only the action group.
private org.eclipse.swt.custom.CTabItem	mainitem Main tab item, contains the main tab components.
private org.eclipse.swt.widgets.Composite	maintab The composite of the main tab item.
private org.eclipse.swt.custom.CTabFolder	MainTab The main tab viewed when running MAGIC.
private org.eclipse.swt.widgets.MessageBox	messageBox A default message box.
private java.util.ResourceBundle	messages A resource bundle set to enable internationalization.
private java.lang.String	outputDirectory Output directory path, default is Magic root/Data.
private org.eclipse.swt.custom.CTabItem	paraitem Parameters tab item.
protected PaintChart	PChart An object building and viewing the chart canvas.
protected ParametersFrame	PFrame Parameters tab object.
private org.eclipse.swt.widgets.Button	RemoveGenomeButton Remove genome button, DISABLED.
private org.eclipse.swt.widgets.Button	RunGenomeButton Run new button, opens a new tab.
(package private) org.eclipse.swt.widgets.Shell	shell The display shell(SWT properties).

Constructor Summary

DataView(java.lang.String[] args, IDataHandler handler)
C'tor, sets the main menu and the main tab, initialize the system according to the settings file.

Method Summary

org.eclipse.swt.widgets.Display	getDisplay() Returns DataView main display.
java.lang.String	getInputDirectory() Retruns input directory as imported from the magic object.
int	getMagicLang() Returns language index from "magic" as initiated, used by controller.
java.lang.String	getOutDirectory() Retruns output directory as imported from the magic object.
org.eclipse.swt.widgets.Shell	getShell() Returns DataView main shell.
private void	initComponents() Inits the main tab and menu and components that will be use as containters.
void	initFrame() Inits the main tab item component with buttons, sets menu details and listeners, "creat and shows GUI".
void	setGenomes() Imports genome names by the controller, and sets combo boxes with the received set of names.
void	setLanguage(java.lang.String string) Sets the language index, used by controller.
private void	setWorkplace(boolean writeToFile) Sets the parameters as read from the settings file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

controller_

private IDataHandler controller_

The controller of magic.

display

org.eclipse.swt.widgets.Display display

The display of magic.

shell

org.eclipse.swt.widgets.Shell shell

The display shell(SWT properties).

PFrame

protected ParametersFrame PFrame

Parameters tab object.

MainTab

private org.eclipse.swt.custom.CTabFolder MainTab

The main tab viewed when running MAGIC.

PChart

protected PaintChart PChart

An object building and viewing the chart canvas.

mainitem

private org.eclipse.swt.custom.CTabItem mainitem

Main tab item, contains the main tab components.

paraitem

private org.eclipse.swt.custom.CTabItem paraitem

Parameters tab item.

maintab

private org.eclipse.swt.widgets.Composite maintab

The composite of the main tab item. In order for a tab item to include components, it should has a control of composite type.

messageBox

private org.eclipse.swt.widgets.MessageBox messageBox

A default message box.

mainGroup

private org.eclipse.swt.widgets.Group mainGroup

The main group, mean while holding only the action group.

ActionGroup

private org.eclipse.swt.widgets.Group ActionGroup

Group containing the combo boxes and the main tab buttons.

comboGene1

private org.eclipse.swt.widgets.Combo comboGene1

First genome combo box.

comboGene2

private org.eclipse.swt.widgets.Combo comboGene2

Second genome combo box.

AddGenomeButton

private org.eclipse.swt.widgets.Button AddGenomeButton

Add new genome button.

RemoveGenomeButton

private org.eclipse.swt.widgets.Button RemoveGenomeButton

Remove genome button, DISABLED.

HistoryButton

private org.eclipse.swt.widgets.Button HistoryButton

History button, opens a new tab.

RunGenomeButton

private org.eclipse.swt.widgets.Button RunGenomeButton

Run new button, opens a new tab.

Instructions

private org.eclipse.swt.widgets.Group Instructions

Instructions groups, meanwhile conatining a label.

inputDirectory

private java.lang.String inputDirectory

Input directory path, default is Magic root/Data.

outputDirectory

private java.lang.String outputDirectory

Output directory path, default is Magic root/Data.

magic

private Magic magic

An object holding magic default settings/or settings set by the user. Low priority: It should move to controller.

messages

private java.util.ResourceBundle messages

A resource bundle set to enable internationalization.

Constructor Detail

DataView

public DataView(java.lang.String[] args,
                IDataHandler handler)

C'tor, sets the main menu and the main tab, initialize the system according to the settings file.

Parameters:

args - Strings[]: not used, only for extending option.

handler - IDataHandler: the controller of MAGIC.

Method Detail

initComponents

private void initComponents()

Inits the main tab and menu and components that will be use as containters.

setWorkplace

private void setWorkplace(boolean writeToFile)

Sets the parameters as read from the settings file. writeToFile option is for a case dameged or missing system(MAGIC) settings file, if deleted it will automaticly create a new file with the needed info.

Parameters:

writeToFile - boolean: true if the settings file is messing.

initFrame

public void initFrame()

Inits the main tab item component with buttons, sets menu details and listeners, "creat and shows GUI".

getInputDirectory

public java.lang.String getInputDirectory()

Retruns input directory as imported from the magic object. note: moves with magic to the controller.

Returns:

String : input directory.

getOutDirectory

public java.lang.String getOutDirectory()

Retruns output directory as imported from the magic object. note: moves with magic to the controller.

Returns:

String : output directory.

getMagicLang

public int getMagicLang()

Returns language index from "magic" as initiated, used by controller. note: this should move to controller too.

Returns:

int: the language index.

setLanguage

public void setLanguage(java.lang.String string)

Sets the language index, used by controller. note: this should move to controller too.

Parameters:

string - String: the langauage index.

getShell

public org.eclipse.swt.widgets.Shell getShell()

Returns DataView main shell.

Returns:

DataView main shell.

getDisplay

public org.eclipse.swt.widgets.Display getDisplay()

Returns DataView main display.

Returns:

DataView main display.

setGenomes

public void setGenomes()

Imports genome names by the controller, and sets combo boxes with the received set of names.