view
Class History

java.lang.Object
  view.History

public class History
extends java.lang.Object

Title: Bioinformatics Project

Description: Genomes Comparacent

Copyright: Copyright (c) 2005-2006

History class contains data structure of the history tab, includes history table, parameters tables and listeners for buttons that can be used to run mapping, or showing results of ether mapping/preprocessing phases.

Version:

1.0

Author:

Shadi Ibrahem.

Field Summary

protected java.lang.String	ChosenDir The directory name of the Mapping/preprocessing history.
protected java.lang.String	ChosenPart A string indicating the sub directories types.
private org.eclipse.swt.widgets.Combo	comboGene1 Genome combo for filtering the history tables.
private org.eclipse.swt.widgets.Combo	comboGene2 Genome combo for filtering the history tables.
private IDataHandler	controller_ Magic controller.
private org.eclipse.swt.widgets.TabFolder	HisTab The history tables tab.
protected boolean	isParaVisible Indicates wether the parameters tables are visible or not.
private SWTTable	mapHistory Mapping history table.
private org.eclipse.swt.widgets.Composite	MapPComp The control of the mapping tab item.
private java.util.ResourceBundle	messages Internationalization.
private org.eclipse.swt.widgets.TabItem	ParaMapitem Preprocessing tab item.
private SWTTable	preHistory Pre processing history table.
private org.eclipse.swt.widgets.Composite	PrePComp The control of the preprocessing tab item.
protected SWTTable	selectedTable A reference to the visible(chosen) table.
private SWTTable[]	table Parameters tables.
private org.eclipse.swt.events.SelectionListener	TableListener Both history tables listeners.

Constructor Summary

History(org.eclipse.swt.widgets.Shell shell, org.eclipse.swt.custom.CTabFolder MainTab, IDataHandler cont, org.eclipse.swt.widgets.Display display)
C'tor, bulding and viewing the history tab, initiates the tab with the default features (buttons,labels,tables,listeners ..

Method Summary

private void	ClearTables()
protected boolean	FindNeededFiles(java.lang.String InfoDir)
protected java.lang.String	getDirectory(SWTTable Table, int i) Constructs a string from the given table lines , this string used as an existing directory name.
private java.lang.String[]	getRowString(java.lang.String dir, java.lang.String part) Helper method,used in "setTable" method to extract the a line info from the given directory name.
private void	setMapTable() Initiates the mapping parameters tables.
private void	setPreTable() Initiates the preprocessing parameters tables.
void	setTable(SWTTable Table, java.lang.String dir, java.lang.String part) Initiates the table rows with relevant histroy regarding chosen genomes in the combo boxes, it searchs through the relevant histroy folder for directories with the relevant names.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

controller_

private IDataHandler controller_

Magic controller.

isParaVisible

protected boolean isParaVisible

Indicates wether the parameters tables are visible or not.

comboGene1

private org.eclipse.swt.widgets.Combo comboGene1

Genome combo for filtering the history tables.

comboGene2

private org.eclipse.swt.widgets.Combo comboGene2

Genome combo for filtering the history tables.

preHistory

private SWTTable preHistory

Pre processing history table.

mapHistory

private SWTTable mapHistory

Mapping history table.

TableListener

private org.eclipse.swt.events.SelectionListener TableListener

Both history tables listeners.

selectedTable

protected SWTTable selectedTable

A reference to the visible(chosen) table.

ChosenDir

protected java.lang.String ChosenDir

The directory name of the Mapping/preprocessing history.

ChosenPart

protected java.lang.String ChosenPart

A string indicating the sub directories types.

table

private SWTTable[] table

Parameters tables.

PrePComp

private org.eclipse.swt.widgets.Composite PrePComp

The control of the preprocessing tab item.

MapPComp

private org.eclipse.swt.widgets.Composite MapPComp

The control of the mapping tab item.

ParaMapitem

private org.eclipse.swt.widgets.TabItem ParaMapitem

Preprocessing tab item.

HisTab

private org.eclipse.swt.widgets.TabFolder HisTab

The history tables tab.

messages

private java.util.ResourceBundle messages

Internationalization.

Constructor Detail

History

public History(org.eclipse.swt.widgets.Shell shell,
               org.eclipse.swt.custom.CTabFolder MainTab,
               IDataHandler cont,
               org.eclipse.swt.widgets.Display display)

C'tor, bulding and viewing the history tab, initiates the tab with the default features (buttons,labels,tables,listeners .. etc).

Parameters:

shell - Shell: DataView shell, used for error messages.

MainTab - CTabFolder: DataView main tab, used to put the history tab in it.

cont - IDataHandler: Magic controller.

display - Display: Dataview display, used for running threads asynchroniusly.

Method Detail

FindNeededFiles

protected boolean FindNeededFiles(java.lang.String InfoDir)

getDirectory

protected java.lang.String getDirectory(SWTTable Table,
                                        int i)

Constructs a string from the given table lines , this string used as an existing directory name.

Parameters:

Table - SWTTable: a histroy table.

i - int: the line index in the table.

Returns:

String: the directory name.

setTable

public void setTable(SWTTable Table,
                     java.lang.String dir,
                     java.lang.String part)

Initiates the table rows with relevant histroy regarding chosen genomes in the combo boxes, it searchs through the relevant histroy folder for directories with the relevant names.

Parameters:

Table - SWTTable: the selected histroy table.

dir - String: the relvant history directory.

part - String: the sub directories type.

getRowString

private java.lang.String[] getRowString(java.lang.String dir,
                                        java.lang.String part)

Helper method,used in "setTable" method to extract the a line info from the given directory name.

Parameters:

dir - String: directory name

part - String: the sub directories type.

Returns:

String[]: the line in the table devided into columns.

setPreTable

private void setPreTable()

Initiates the preprocessing parameters tables.

setMapTable

private void setMapTable()

Initiates the mapping parameters tables.

ClearTables

private void ClearTables()