- b -

• BinarySearch() : Table< GENOME_TYPE >

- c -

• CleanDeleted() : Table< GENOME_TYPE >
• CleanDup() : Table< GENOME_TYPE >
• CleanProphages() : Table< GENOME_TYPE >
• CleanShortEntries() : Table< GENOME_TYPE >
• CleanTE() : Table< GENOME_TYPE >
• Clustering() : Table< GENOME_TYPE >

- d -

• Delete() : Entry< GENUM_TYPE >
• DeleteEntry() : Table< GENOME_TYPE >

- e -

• Entry() : Entry< GENUM_TYPE >

- f -

• FillEnds() : Table< GENOME_TYPE >
• FilterSet() : Table< GENOME_TYPE >

- g -

• Genome() : Genome< GENOME_TYPE >
• GetDupGroup() : Table< GENOME_TYPE >
• GetGenomeLen() : Genome< GENOME_TYPE >
• GetGenomeName() : Genome< GENOME_TYPE >
• GetLabel() : Entry< GENUM_TYPE >
• GetLength() : Table< GENOME_TYPE >
• GetS1E1() : Entry< GENUM_TYPE >
• GetS2E2() : Entry< GENUM_TYPE >
• GetSign() : Entry< GENUM_TYPE >

- i -

• InersecLen() : Table< GENOME_TYPE >
• InseretEntry() : Entry< GENUM_TYPE >
• InsertEntries() : Table< GENOME_TYPE >
• Intersec() : Table< GENOME_TYPE >
• IsDuplication() : Table< GENOME_TYPE >
• IsGenomeCircular() : Genome< GENOME_TYPE >
• IsInUse() : Entry< GENUM_TYPE >
• IterativeRemoveOverlaps() : Table< GENOME_TYPE >

- j -

• Join() : Table< GENOME_TYPE >
• JoinForDeletedParalogs() : Table< GENOME_TYPE >
• JoinForOverlap() : Table< GENOME_TYPE >

- l -

• Loop() : Table< GENOME_TYPE >

- m -

• ManipulateStartsAndEnds() : Table< GENOME_TYPE >

- o -

• operator()() : compare_entries_2< GENOME_TYPE >, compare_entries_1< GENOME_TYPE >
• operator=() : Genome< GENOME_TYPE >, Entry< GENUM_TYPE >
• operator==() : Entry< GENUM_TYPE >

- p -

• PrintDeletedParalogs() : Table< GENOME_TYPE >
• PrintTable() : Table< GENOME_TYPE >

- r -

• ReadFromProbFile() : Table< GENOME_TYPE >
• RemoveFinalConflicts() : Table< GENOME_TYPE >
• RemoveFinalOverlaping() : Table< GENOME_TYPE >
• RemoveNuisances() : Table< GENOME_TYPE >
• RemoveOverlaps() : Table< GENOME_TYPE >
• RemoveParalogs() : Table< GENOME_TYPE >

- s -

• SetGenomeCircular() : Genome< GENOME_TYPE >
• SetGenomeLen() : Genome< GENOME_TYPE >
• SetGenomeName() : Genome< GENOME_TYPE >
• SetS1E1() : Entry< GENUM_TYPE >
• SetS2E2() : Entry< GENUM_TYPE >
• SortBy() : Table< GENOME_TYPE >
• SwapEntries() : Table< GENOME_TYPE >

- t -

• Table() : Table< GENOME_TYPE >

- u -

• UpDateCircInfo() : Table< GENOME_TYPE >

- ~ -

• ~Entry() : Entry< GENUM_TYPE >
• ~Genome() : Genome< GENOME_TYPE >
• ~Table() : Table< GENOME_TYPE >

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