SEQ< GENOME_TYPE > Class Template Reference

#include <seq.h>

List of all members.

Public Member Functions
	SEQ ()
	SEQ (const SEQ< GENOME_TYPE > &G)
	~SEQ ()
SEQ< GENOME_TYPE > &	operator= (const SEQ< GENOME_TYPE > &G)
void	set_KO (string KO)
void	set_start (GENOME_TYPE start)
void	set_end (GENOME_TYPE end)
void	set_orientation (const char orientation)
void	set_info (string str)
void	set_dirty ()
GENOME_TYPE	get_start () const
GENOME_TYPE	get_end () const
string	get_KO () const
char	get_orientation () const
string	get_info () const
int	get_dirty () const
bool	operator< (const SEQ< GENOME_TYPE > &g) const
bool	operator> (const SEQ< GENOME_TYPE > &g) const
bool	operator== (const SEQ< GENOME_TYPE > &g) const
Private Attributes
GENOME_TYPE	Start
GENOME_TYPE	End
char	Orientation
string	info
string	KO
int	dirty

template<class GENOME_TYPE>
class SEQ< GENOME_TYPE >

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Constructor & Destructor Documentation

template<class GENOME_TYPE> SEQ< GENOME_TYPE >::SEQ (   )  [inline]

Default constructor. Initializes the "dirty" field with 0.

template<class GENOME_TYPE> SEQ< GENOME_TYPE >::SEQ (  const SEQ< GENOME_TYPE > &  G  )

Copy constructor. Parameters: G,:  SEQ<GENOME_TYPE> object reference.

template<class GENOME_TYPE> SEQ< GENOME_TYPE >::~SEQ (   )  [inline]

Destructor.

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Member Function Documentation

template<class GENOME_TYPE> int SEQ< GENOME_TYPE >::get_dirty (   )  const

Returns the "dirty" field of the sequence. Returns: GENOME_TYPE

template<class GENOME_TYPE> GENOME_TYPE SEQ< GENOME_TYPE >::get_end (   )  const

Returns the ending coordinate of the sequence. Returns: GENOME_TYPE

template<class GENOME_TYPE> string SEQ< GENOME_TYPE >::get_info (   )  const

Returns the "info" field of the sequence. Returns: string

template<class GENOME_TYPE> string SEQ< GENOME_TYPE >::get_KO (   )  const

Returns the KO of the sequence. Returns: string

template<class GENOME_TYPE> char SEQ< GENOME_TYPE >::get_orientation (   )  const

Returns the orientation of the sequence. Returns: char

template<class GENOME_TYPE> GENOME_TYPE SEQ< GENOME_TYPE >::get_start (   )  const

Returns the beginning coordinate of the sequence. Returns: GENOME_TYPE

template<class GENOME_TYPE> bool SEQ< GENOME_TYPE >::operator< (  const SEQ< GENOME_TYPE > &  g  )  const

Operator < . Compares between this and g according to KO field. Parameters: g,:  const SEQ<GENOME_TYPE>& Returns: bool

template<class GENOME_TYPE> SEQ< GENOME_TYPE > & SEQ< GENOME_TYPE >::operator= (  const SEQ< GENOME_TYPE > &  G  )

Assignment operator. Copies G's fields to the current object fields. Parameters: G,:  const SEQ<GENOME_TYPE>& Returns: SEQ<GENOME_TYPE>&

template<class GENOME_TYPE> bool SEQ< GENOME_TYPE >::operator== (  const SEQ< GENOME_TYPE > &  g  )  const

Operator == . Compares between this and g according to KO field. Parameters: g,:  const SEQ<GENOME_TYPE>& Returns: bool

template<class GENOME_TYPE> bool SEQ< GENOME_TYPE >::operator> (  const SEQ< GENOME_TYPE > &  g  )  const

Operator > . Compares between this and g according to KO field. Parameters: g,:  const SEQ<GENOME_TYPE>& Returns: bool

template<class GENOME_TYPE> void SEQ< GENOME_TYPE >::set_dirty (   )

Sets the "dirty" field of the sequence to 1.

template<class GENOME_TYPE> void SEQ< GENOME_TYPE >::set_end (  GENOME_TYPE  end  )

Sets the ending coordinate of the sequence. Parameters: end,:  GENOME_TYPE

template<class GENOME_TYPE> void SEQ< GENOME_TYPE >::set_info (  string  str  )

Sets the "info" field of the sequence. Parameters: str,:  string

template<class GENOME_TYPE> void SEQ< GENOME_TYPE >::set_KO (  string  KO  )

Sets the KO of the calling object. Parameters: KO,:  string.

template<class GENOME_TYPE> void SEQ< GENOME_TYPE >::set_orientation (  const char  orientation  )

Sets the orientation of the sequence. Parameters: orientation,:  char

template<class GENOME_TYPE> void SEQ< GENOME_TYPE >::set_start (  GENOME_TYPE  start  )

Sets the beginning coordinate of the sequence. Parameters: start,:  GENOME_TYPE

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Member Data Documentation

template<class GENOME_TYPE> int SEQ< GENOME_TYPE >::dirty [private]

An auxiliary field which was used in cleanfile.h. 0 is for valid and 1 is for not valid.

template<class GENOME_TYPE> GENOME_TYPE SEQ< GENOME_TYPE >::End [private]

template<class GENOME_TYPE> string SEQ< GENOME_TYPE >::info [private]

The suitable entry from the file *.anchor.

template<class GENOME_TYPE> string SEQ< GENOME_TYPE >::KO [private]

The sequence's KO.

template<class GENOME_TYPE> char SEQ< GENOME_TYPE >::Orientation [private]

The sequence's orientation.

template<class GENOME_TYPE> GENOME_TYPE SEQ< GENOME_TYPE >::Start [private]

The sequence's coordinates.

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The documentation for this class was generated from the following file:

• C:/cygwin/doc/seq.h

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