C:/cygwin/doc/main.cpp File Reference

#include "cleanfile.h"
#include "seq.h"
#include "kises.h"
#include "prepro.h"
#include "globalVars.h"

Functions
int	checkArgs (int argc, char **argv)
int	main (int argc, char **argv)

---

Function Documentation

int checkArgs (  int  argc, char **  argv )

int main (  int  argc, char **  argv )

Args check File cleaning Finding intersection Finding KISs Performing global alignment on KISs Extracting gaps Extracting breakpoints Performing local alignment Stitching hits Extracting gaps from hits Adding stitched hits to the KIS table

---