C:/cygwin/doc/umr.cpp File Reference

#include "umr.h"
#include "globalVars.h"
#include <fstream>

Functions
long	extractUnmatchedRegions (string seq1, string seq2, long **gaps)
long	findGaps (string seq, long **gaps)
long	joinGaps (long **gaps, long len)
long	extractGaps (long **gaps, long len)
void	getIntersection (long **gaps, long **gaps1, long **gaps2, long len1, long len2)
void	mergeGaps (long **gaps, long **gaps1, long **gaps2, long len1, long len2)
long **	allocateMtx (long len, long wid)
void	freeMtx (long **mtx, long len)

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Function Documentation

long** allocateMtx (  long  len, long  wid )

long extractGaps (  long **  gaps, long  len )

long extractUnmatchedRegions (  string  seq1, string  seq2, long **  gaps )

long findGaps (  string  seq, long **  gaps )

void freeMtx (  long **  mtx, long  len )

void getIntersection (  long **  gaps, long **  gaps1, long **  gaps2, long  len1, long  len2 )

long joinGaps (  long **  gaps, long  len )

void mergeGaps (  long **  gaps, long **  gaps1, long **  gaps2, long  len1, long  len2 )

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