A B C D E F G H I L M N O P R S T U V X Y

R

ReadLine(FileReader, char[]) - Method in class controller.DataHandler

Reads a line from the file.

ReadLine(FileReader, char[]) - Method in class model.Magic

Reads a line from the given stream.

red - Variable in class view.PaintChart

Canvas colors, red for the scale.

reDraw() - Method in class view.SWTTable

Redraws the table.

removeAll() - Method in class view.SWTTable

Removes all the rows in the table.

removeGenome(String) - Method in class controller.DataHandler

removeGenome(String) - Method in interface controller.IDataHandler

Removes a genome input directory.

RemoveGenome - Class in view

Title: Bioinformatics Project

RemoveGenome(Shell, IDataHandler, String[]) - Constructor for class view.RemoveGenome

C'tor, builds the main view, constructs combo and the label.

RemoveGenomeButton - Variable in class view.DataView

Remove genome button, DISABLED.

removeListener() - Method in class view.SWTTable

Removes the table listener.

RestoreDefaultButton1 - Variable in class view.ParametersFrame

A button.

RestoreDefaultButton2 - Variable in class view.ParametersFrame

A button.

RNA_gene_num - Variable in class model.Genome

Genome RNA gene number.

RunApp - Class in <Unnamed>

Title: Bioinformatics Project

RunApp() - Constructor for class RunApp

RunGenomeButton - Variable in class view.DataView

Run new button, opens a new tab.

runMapPid - Variable in class view.GRunTab

Pid for termentation, to enable the user to terminate process, process termination is NOT implemented, see "Developer GuideLine".

runMappingProcess(String, String, String, String, String, String, String[]) - Method in class controller.DataHandler

runMappingProcess(String, String, String, String, String, String, String[]) - Method in interface controller.IDataHandler

Runs the mapping process.

runPrePid - Variable in class view.GRunTab

Pid for termentation, to enable the user to terminate process, process termination is NOT implemented, see "Developer GuideLine".

runPreProcessing(String, String, String, String[], boolean, GRunTab, String, String[]) - Method in class controller.DataHandler

runPreProcessing(String, String, String, String[], boolean, GRunTab, String, String[]) - Method in interface controller.IDataHandler

Runs the pre-processing phase in a NEW PROCESS outside of VM.

RunTab - Variable in class view.GRunTab

The tab that will hold the view of the required form.