A B C D E F G H I L M N O P R S T U V X Y

D

DataHandler - Class in controller

Title: Bioinformatics Project

DataHandler(IDataManager, String[]) - Constructor for class controller.DataHandler

Creates a controller of the model and the view, it creats the view and takes the model as a parameter.

DataManager - Class in model

Title: Bioinformatics Project

DataManager() - Constructor for class model.DataManager

DataView - Class in view

Title: Bioinformatics Project

DataView(String[], IDataHandler) - Constructor for class view.DataView

C'tor, sets the main menu and the main tab, initialize the system according to the settings file.

deleteFileOrDirectory(String) - Method in class controller.DataHandler

deleteFileOrDirectory(String) - Method in interface controller.IDataHandler

Deletes a file or a Directory recursively.

deleteRowsinTable(SWTTable, int[], String, String) - Method in class controller.DataHandler

deleteRowsinTable(SWTTable, int, String, String) - Method in class controller.DataHandler

deleteRowsinTable(SWTTable, int[], String, String) - Method in interface controller.IDataHandler

Deletes Rows from given table which indices are in selectedIndices.

deleteRowsinTable(SWTTable, int, String, String) - Method in interface controller.IDataHandler

Deletes ALL Rows from given table.

DeleteSelected(boolean) - Method in class view.SWTTable

Deletes the selected rows in the table, in case ALL is true, it deletes all the rows in the table.

deselectAll() - Method in class view.SWTTable

Unmarks the selected rows.

display - Variable in class view.DataView

The display of magic.

display - Static variable in class view.GRunTab

Data View display.

dispose() - Method in class view.GRunTab

Disposing a Run tab when exiting or canceling.

dispose() - Method in class view.SWTTable

Disposes the table.

doCCode(int, String[]) - Method in class Cmapping.Native

Calls the native C++ doCCodde, the method is implemented in p1.cpp, linked by the file "Cmapping_Native.h" , the p1.cpp "native" header.

doCPreCode(int, String[]) - Method in class Cpreprocessing.NativePre

Calls the native C++ doCCodde, the method is implemented in p1.cpp, linked by the file "Cmapping_Native.h" , the p1.cpp "native" header.

DrawChart(String, long, long, boolean) - Method in class view.GRunTab

Shows the progress bar while drawing process is beeing done, show also the canvas afterwards.

drawChart(Vector, long, long, ProgressBar) - Method in class view.PaintChart

Draws the whole chart in the canvas, uses the method PaintLineInChart in order to draw each line extracted from the line vector.

DrawFileName - Variable in class view.GRunTab

String holding the file name of the output that the user wants to present it results.

drawScale(long, long) - Method in class view.PaintChart

Draws the scale of the canvas according to the genome lengths.

dupPerc - Variable in class model.Magic

Parameter: finding duplicates.

dupPerc - Variable in class view.ParametersFrame

Parameters set by the user.

dupPerclabel - Variable in class view.ParametersFrame

Parameter label.

dupPerctext - Variable in class view.ParametersFrame

Text field for the parameter.